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Paste #972: python-biopython
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(tdn@bart) (07-10-14 0:18) (P:0 L:1) [0] [ 00:18:09 up 3 days, 56 min, 1 user, load average: 1.25, 1.38, 1.35] ~ $ sudo aptitude install python-biopython Password: Reading package lists... Done Building dependency tree Reading state information... Done Reading extended state information Initializing package states... Done Building tag database... Done The following NEW packages will be automatically installed: python-biopython-doc python-biopython-martel python-egenix-mxtexttools python-imaging python-reportlab python-xml wise wise-doc The following NEW packages will be installed: python-biopython python-biopython-doc python-biopython-martel python-egenix-mxtexttools python-imaging python-reportlab python-xml wise wise-doc 0 packages upgraded, 9 newly installed, 0 to remove and 0 not upgraded. Need to get 8700kB of archives. After unpacking 28,3MB will be used. Do you want to continue? [Y/n/?] Writing extended state information... Done Get:1 http://dk.archive.ubuntu.com feisty/universe python-biopython-martel 1.42-2 [58,9kB] Get:2 http://dk.archive.ubuntu.com feisty/main python-xml 0.8.4-6ubuntu4 [770kB] Get:3 http://dk.archive.ubuntu.com feisty/main python-reportlab 2.0dfsg-1 [716kB] Get:4 http://dk.archive.ubuntu.com feisty/main python-egenix-mxtexttools 2.0.6ubuntu1-5ubuntu1 [82,4kB] Get:5 http://dk.archive.ubuntu.com feisty/universe python-biopython 1.42-2 [892kB] Get:6 http://dk.archive.ubuntu.com feisty/universe python-biopython-doc 1.42-2 [2934kB] Get:7 http://dk.archive.ubuntu.com feisty/main python-imaging 1.1.6-0ubuntu3 [396kB] Get:8 http://dk.archive.ubuntu.com feisty/universe wise 2.2.0-3 [2078kB] Get:9 http://dk.archive.ubuntu.com feisty/universe wise-doc 2.2.0-3 [773kB] Fetched 8700kB in 52s (165kB/s) Selecting previously deselected package python-biopython-martel. (Reading database ... 169988 files and directories currently installed.) Unpacking python-biopython-martel (from .../python-biopython-martel_1.42-2_all.deb) ... Selecting previously deselected package python-xml. Unpacking python-xml (from .../python-xml_0.8.4-6ubuntu4_i386.deb) ... Selecting previously deselected package python-reportlab. Unpacking python-reportlab (from .../python-reportlab_2.0dfsg-1_all.deb) ... Selecting previously deselected package python-egenix-mxtexttools. Unpacking python-egenix-mxtexttools (from .../python-egenix-mxtexttools_2.0.6ubuntu1-5ubuntu1_i386.deb) ... Selecting previously deselected package python-biopython. Unpacking python-biopython (from .../python-biopython_1.42-2_i386.deb) ... Selecting previously deselected package python-biopython-doc. Unpacking python-biopython-doc (from .../python-biopython-doc_1.42-2_all.deb) ... Selecting previously deselected package python-imaging. Unpacking python-imaging (from .../python-imaging_1.1.6-0ubuntu3_i386.deb) ... Selecting previously deselected package wise. Unpacking wise (from .../archives/wise_2.2.0-3_i386.deb) ... Selecting previously deselected package wise-doc. Unpacking wise-doc (from .../wise-doc_2.2.0-3_all.deb) ... Setting up python-xml (0.8.4-6ubuntu4) ... Setting up python-reportlab (2.0dfsg-1) ... /usr/lib/python2.5/site-packages/reportlab/lib/PyFontify.py:35: Warning: 'with' will become a reserved keyword in Python 2.6 /usr/lib/python2.5/site-packages/reportlab/lib/PyFontify.py:36: Warning: 'with' will become a reserved keyword in Python 2.6 Setting up python-egenix-mxtexttools (2.0.6ubuntu1-5ubuntu1) ... /usr/lib/python2.5/site-packages/mx/TextTools/TextTools.py:170: Warning: 'with' will become a reserved keyword in Python 2.6 /usr/lib/python2.5/site-packages/mx/TextTools/TextTools.py:191: Warning: 'with' will become a reserved keyword in Python 2.6 /usr/lib/python2.5/site-packages/mx/TextTools/TextTools.py:195: Warning: 'with' will become a reserved keyword in Python 2.6 /usr/lib/python2.5/site-packages/mx/TextTools/TextTools.py:206: Warning: 'with' will become a reserved keyword in Python 2.6 /usr/lib/python2.5/site-packages/mx/TextTools/TextTools.py:225: Warning: 'with' will become a reserved keyword in Python 2.6 /usr/lib/python2.5/site-packages/mx/TextTools/TextTools.py:231: Warning: 'with' will become a reserved keyword in Python 2.6 /usr/lib/python2.5/site-packages/mx/TextTools/TextTools.py:244: Warning: 'with' will become a reserved keyword in Python 2.6 /usr/lib/python2.5/site-packages/mx/TextTools/TextTools.py:249: Warning: 'with' will become a reserved keyword in Python 2.6 /usr/lib/python2.5/site-packages/mx/TextTools/TextTools.py:261: Warning: 'with' will become a reserved keyword in Python 2.6 /usr/lib/python2.5/site-packages/mx/TextTools/TextTools.py:557: Warning: 'with' will become a reserved keyword in Python 2.6 /usr/lib/python2.5/site-packages/mx/TextTools/TextTools.py:559: Warning: 'with' will become a reserved keyword in Python 2.6 /usr/lib/python2.5/site-packages/mx/TextTools/TextTools.py:562: Warning: 'with' will become a reserved keyword in Python 2.6 /usr/lib/python2.5/site-packages/mx/TextTools/TextTools.py:566: Warning: 'with' will become a reserved keyword in Python 2.6 /usr/lib/python2.5/site-packages/mx/TextTools/TextTools.py:574: Warning: 'with' will become a reserved keyword in Python 2.6 /usr/lib/python2.5/site-packages/mx/TextTools/TextTools.py:582: Warning: 'with' will become a reserved keyword in Python 2.6 /usr/lib/python2.5/site-packages/mx/TextTools/TextTools.py:590: Warning: 'with' will become a reserved keyword in Python 2.6 Setting up python-biopython-doc (1.42-2) ... Setting up python-imaging (1.1.6-0ubuntu3) ... Setting up wise (2.2.0-3) ... Setting up wise-doc (2.2.0-3) ... Setting up python-biopython-martel (1.42-2) ... Setting up python-biopython (1.42-2) ... Compiling /var/lib/python-support/python2.5/Bio/Wise/dnal.py ... File "/var/lib/python-support/python2.5/Bio/Wise/dnal.py", line 5 from __future__ import division SyntaxError: from __future__ imports must occur at the beginning of the file
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